Tampere Utd 8-1 Carmarthen Town
| 24.06.2006 | Carmarthen Town | 1-3 | Tampere Utd | |
| 17.06.2006 | Tampere Utd | 5-0 | Carmarthen Town | |
*Keflavik IF 4-1 Dungannon Swifts
| 24.06.2006 | Dungannon Swifts | 0-0 | Keflavik IF | |
| 17.06.2006 | Keflavik IF | 4-1 | Dungannon Swifts | |
Ethnikos Achnas 5-4 Partizani Tirana
| 24.06.2006 | Partizani Tirana | 2-1 | Ethnikos Achnas | |
| 17.06.2006 | Ethnikos Achnas | 4-2 | Partizani Tirana | |
FC Nitra 12-2 CS Grevenmacher
| 25.06.2006 | CS Grevenmacher | 0-6 | FC Nitra | |
| 18.06.2006 | FC Nitra | 6-2 | CS Grevenmacher | |
FK MKT Araz 1-2 FC Tiraspol *
| 24.06.2006 | FC Tiraspol | 2-0 AET | FK MKT Araz | |
| 17.06.2006 | FK MKT Araz | 1-0 | FC Tiraspol | |
Dinaburg FC 2-1 HB Torshavn
| 24.06.2006 | HB Torshavn | 0-1 | Dinaburg FC | |
| 18.06.2006 | Dinaburg FC | 1-1 | HB Torshavn | |
Trans Narva 1-8 Kalmar FF
| 25.06.2006 | Kalmar FF | 2-0 | Trans Narva | |
| 17.06.2006 | Trans Narva | 1-6 | Kalmar FF | |
Kilikia Yerevan* 1-8 Dinamo Tbilisi
| 24.06.2006 | Dinamo Tbilisi | 3-0 | Kilikia Yerevan* | |
| 18.06.2006 | Kilikia Yerevan* | 1-5 | Dinamo Tbilisi | |
Shakhtyor Karagandy 4-6 MTZ-RIPO
| 25.06.2006 | MTZ-RIPO | 1-3 | Shakhtyor Karagandy | |
| 17.06.2006 | Shakhtyor Karagandy | 1-5 | MTZ-RIPO | |
Pobeda Prilep 2-4 Farul Constanta
| 25.06.2006 | Farul Constanta | 2-0 | Pobeda Prilep | |
| 18.06.2006 | Pobeda Prilep | 2-2 | Farul Constanta | |
FK Vetra 0-5 Shelbourne FC
| 24.06.2006 | Shelbourne FC | 4-0 | FK Vetra | |
| 18.06.2006 | FK Vetra | 0-1 | Shelbourne FC | |
UE Sant Julià 0-8 Maribor
| 24.06.2006 | Maribor | 5-0 | UE Sant Julià | |
| 18.06.2006 | UE Sant Julià | 0-3 | Maribor | |
Zrinjski Mostar 4-1 Marsaxlokk
| 25.06.2006 | Marsaxlokk | 1-1 | Zrinjski Mostar | |
| 17.06.2006 | Zrinjski Mostar | 3-0 | Marsaxlokk | |