*Ameri Tbilisi 2-2 Banants Yerevan
| 27.07.2006 | Banants Yerevan | 1-2 | Ameri Tbilisi | |
| 13.07.2006 | Ameri Tbilisi | 0-1 | Banants Yerevan | |
*Brøndby IF 3-1 Valur Reykjavik
| 27.07.2006 | Valur Reykjavik | 0-0 | Brøndby IF | |
| 13.07.2006 | Brøndby IF | 3-1 | Valur Reykjavik | |
Mika FC 1-4 BSC Young Boys *
| 27.07.2006 | BSC Young Boys | 1-0 | Mika FC | |
| 13.07.2006 | Mika FC | 1-3 | BSC Young Boys | |
Zaglebie Lubin 1-1 Dinamo Minsk *
| 27.07.2006 | Dinamo Minsk | 0-0 | Zaglebie Lubin | |
| 13.07.2006 | Zaglebie Lubin | 1-1 | Dinamo Minsk | |
Dinamo Tirana 1-5 CSKA Sofia *
| 27.07.2006 | CSKA Sofia | 4-1 | Dinamo Tirana | |
| 13.07.2006 | Dinamo Tirana | 0-1 | CSKA Sofia | |
HJK Helsinki 2-4 Drogheda Utd *
| 27.07.2006 | Drogheda Utd | 3-1 AET | HJK Helsinki | |
| 13.07.2006 | HJK Helsinki | 1-1 | Drogheda Utd | |
*Åtvidabergs FF 7-0 Etzella Ettelbruck
| 27.07.2006 | Etzella Ettelbruck | 0-3 | Åtvidabergs FF | |
| 13.07.2006 | Åtvidabergs FF | 4-0 | Etzella Ettelbruck | |
*FC Fehervar 2-2 Kairat Almaty
| 27.07.2006 | Kairat Almaty | 2-1 | FC Fehervar | |
| 13.07.2006 | FC Fehervar | 1-0 | Kairat Almaty | |
*Levadia Tallinn 2-1 FC Haka
| 27.07.2006 | FC Haka | 1-0 | Levadia Tallinn | |
| 13.07.2006 | Levadia Tallinn | 2-0 | FC Haka | |
*FK Sarajevo 5-0 FC Rànger's
| 27.07.2006 | FC Rànger's | 0-2 | FK Sarajevo | |
| 13.07.2006 | FK Sarajevo | 3-0 | FC Rànger's | |
*FK Ventspils 4-1 GI Gota
| 27.07.2006 | GI Gota | 0-2 | FK Ventspils | |
| 13.07.2006 | FK Ventspils | 2-1 | GI Gota | |
Hibernians Paola 1-9 Dinamo Bucuresti *
| 27.07.2006 | Dinamo Bucuresti | 5-1 | Hibernians Paola | |
| 13.07.2006 | Hibernians Paola | 0-4 | Dinamo Bucuresti | |
HNK Orasje 0-7 Domžale *
| 27.07.2006 | Domžale | 5-0 | HNK Orasje | |
| 13.07.2006 | HNK Orasje | 0-2 | Domžale | |
IFK Göteborg 0-2 Derry City *
| 27.07.2006 | Derry City | 1-0 | IFK Göteborg | |
| 13.07.2006 | IFK Göteborg | 0-1 | Derry City | |
Jeunesse Esch 0-5 Skonto Riga *
| 27.07.2006 | Skonto Riga | 3-0 | Jeunesse Esch | |
| 13.07.2006 | Jeunesse Esch | 0-2 | Skonto Riga | |
Varteks Varazdin 1-3 KF Tirana *
| 27.07.2006 | KF Tirana | 2-0 | Varteks Varazdin | |
| 13.07.2006 | Varteks Varazdin | 1-1 | KF Tirana | |
Koper 0-6 Litex Lovech *
| 27.07.2006 | Litex Lovech | 5-0 | Koper | |
| 13.07.2006 | Koper | 0-1 | Litex Lovech | |
Gefle IF 1-2 Llanelli Town *
| 27.07.2006 | Llanelli Town | 0-0 | Gefle IF | |
| 13.07.2006 | Gefle IF | 1-2 | Llanelli Town | |
*Lyn Oslo 1-1 Flora Tallinn
| 27.07.2006 | Flora Tallinn | 0-0 | Lyn Oslo | |
| 13.07.2006 | Lyn Oslo | 1-1 | Flora Tallinn | |
*Lokomotiv Sofia 3-1 Makedonija GP
| 27.07.2006 | Makedonija GP | 1-1 | Lokomotiv Sofia | |
| 13.07.2006 | Lokomotiv Sofia | 2-0 | Makedonija GP | |
*BATE Borisov 3-0 Nistru Otaci
| 27.07.2006 | Nistru Otaci | 0-1 | BATE Borisov | |
| 13.07.2006 | BATE Borisov | 2-0 | Nistru Otaci | |
HNK Rijeka 3-4 Omonia Nicosia *
| 27.07.2006 | Omonia Nicosia | 2-1 | HNK Rijeka | |
| 13.07.2006 | HNK Rijeka | 2-2 | Omonia Nicosia | |
Portadown FC 1-4 FBK Kaunas *
| 27.07.2006 | FBK Kaunas | 1-0 | Portadown FC | |
| 13.07.2006 | Portadown FC | 1-3 | FBK Kaunas | |
Zimbru Chisinau 3-2 Qarabag FK *
| 27.07.2006 | Qarabag FK | 1-2 AET | Zimbru Chisinau | |
| 13.07.2006 | Zimbru Chisinau | 1-1 | Qarabag FK | |
*Randers FC 2-2 IA Akranes
| 27.07.2006 | IA Akranes | 2-1 | Randers FC | |
| 13.07.2006 | Randers FC | 1-0 | IA Akranes | |
Glentoran Belfast 0-2 SK Brann *
| 27.07.2006 | SK Brann | 1-0 | Glentoran Belfast | |
| 13.07.2006 | Glentoran Belfast | 0-1 | SK Brann | |
*Rapid Bucuresti 6-0 Sliema Wanderers
| 27.07.2006 | Sliema Wanderers | 0-1 | Rapid Bucuresti | |
| 13.07.2006 | Rapid Bucuresti | 5-0 | Sliema Wanderers | |
*Karvan Yevlax 2-0 Spartak Trnava
| 27.07.2006 | Spartak Trnava | 0-1 | Karvan Yevlax | |
| 13.07.2006 | Karvan Yevlax | 1-0 | Spartak Trnava | |
*FC Basel 3-1 Tobol Kostanay
| 27.07.2006 | Tobol Kostanay | 0-0 | FC Basel | |
| 13.07.2006 | FC Basel | 3-1 | Tobol Kostanay | |
Vardar Skopje 2-7 Roeselare *
| 27.07.2006 | Roeselare | 5-1 | Vardar Skopje | |
| 13.07.2006 | Vardar Skopje | 1-2 | Roeselare | |
*FC Artmedia Bratislava 3-2 WIT Georgia
| 27.07.2006 | WIT Georgia | 2-1 | FC Artmedia Bratislava | |
| 13.07.2006 | FC Artmedia Bratislava | 2-0 | WIT Georgia | |