FC Artmedia Petržalka 1-1 Dunajska Streda
| 04.11.2008 | Dunajska Streda | 1-1 | FC Artmedia Petržalka | |
| 22.10.2008 | FC Artmedia Petržalka | 0-0 | Dunajska Streda | |
FK Dubnica nad Váhom 0-3 MFK Ruzomberok
| 04.11.2008 | MFK Ruzomberok | 2-0 | FK Dubnica nad Váhom | |
| 21.10.2008 | FK Dubnica nad Váhom | 0-1 | MFK Ruzomberok | |
MFK Kosice 2-2 Zlate Moravce
| 04.11.2008 | Zlate Moravce | 1-1/p.3-5 | MFK Kosice | |
| 21.10.2008 | MFK Kosice | 1-1 | Zlate Moravce | |
MSK Zilina 1-2 Slovan Bratislava *
| 18.03.2009 | Slovan Bratislava | 0-0 | MSK Zilina | |
| 04.03.2009 | MSK Zilina | 1-2 | Slovan Bratislava | |