*AEL Limassol 3-0 Linfield Belfast
| 25.07.2012 | Linfield Belfast | 0-0 | AEL Limassol | |
| 18.07.2012 | AEL Limassol | 3-0 | Linfield Belfast | |
*BATE Borisov 3-2 Vardar Skopje
| 25.07.2012 | Vardar Skopje | 0-0 | BATE Borisov | |
| 18.07.2012 | BATE Borisov | 3-2 | Vardar Skopje | |
Skenderbeu 1-3 Debrecen VSC *
| 24.07.2012 | Debrecen VSC | 3-0 | Skenderbeu | |
| 17.07.2012 | Skenderbeu | 1-0 | Debrecen VSC | |
*F91 Dudelange 4-4 RB Salzburg
| 24.07.2012 | RB Salzburg | 4-3 | F91 Dudelange | |
| 17.07.2012 | F91 Dudelange | 1-0 | RB Salzburg | |
Shamrock Rovers 1-2 FK Ekranas *
| 24.07.2012 | FK Ekranas | 2-1 | Shamrock Rovers | |
| 17.07.2012 | Shamrock Rovers | 0-0 | FK Ekranas | |
Valletta FC 2-7 FK Partizan *
| 24.07.2012 | FK Partizan | 3-1 | Valletta FC | |
| 17.07.2012 | Valletta FC | 1-4 | FK Partizan | |
*Molde FK 4-1 FK Ventspils
| 24.07.2012 | FK Ventspils | 1-1 | Molde FK | |
| 18.07.2012 | Molde FK | 3-0 | FK Ventspils | |
Flora Tallinn 0-5 FC Basel *
| 24.07.2012 | FC Basel | 3-0 | Flora Tallinn | |
| 17.07.2012 | Flora Tallinn | 0-2 | FC Basel | |
*HJK Helsinki 9-1 KR Reykjavik
| 24.07.2012 | KR Reykjavik | 1-2 | HJK Helsinki | |
| 17.07.2012 | HJK Helsinki | 7-0 | KR Reykjavik | |
Ludogorets 3-4 Dinamo Zagreb *
| 25.07.2012 | Dinamo Zagreb | 3-2 | Ludogorets | |
| 18.07.2012 | Ludogorets | 1-1 | Dinamo Zagreb | |
*Maribor 6-2 FK Zeljeznicar
| 24.07.2012 | FK Zeljeznicar | 1-2 | Maribor | |
| 18.07.2012 | Maribor | 4-1 | FK Zeljeznicar | |
MSK Zilina 1-2 Ironi Kiryat Shmona *
| 24.07.2012 | Ironi Kiryat Shmona | 2-0 | MSK Zilina | |
| 17.07.2012 | MSK Zilina | 1-0 | Ironi Kiryat Shmona | |
*Neftchi Baku 5-2 FC Zestafoni
| 24.07.2012 | FC Zestafoni | 2-2 | Neftchi Baku | |
| 17.07.2012 | Neftchi Baku | 3-0 | FC Zestafoni | |
*Slovan Liberec 2-1 Shakhtyor Karagandy
| 24.07.2012 | Shakhtyor Karagandy | 1-1 AET | Slovan Liberec | |
| 17.07.2012 | Slovan Liberec | 1-0 | Shakhtyor Karagandy | |
Ulisses Yerevan 0-2 Sheriff Tiraspol *
| 24.07.2012 | Sheriff Tiraspol | 1-0 | Ulisses Yerevan | |
| 17.07.2012 | Ulisses Yerevan | 0-1 | Sheriff Tiraspol | |
FK Buducnost 1-2 Śląsk Wrocław *
| 25.07.2012 | Śląsk Wrocław | 0-1 | FK Buducnost | |
| 18.07.2012 | FK Buducnost | 0-2 | Śląsk Wrocław | |
The New Saints 0-3 Helsingborg *
| 25.07.2012 | Helsingborg | 3-0 | The New Saints | |
| 17.07.2012 | The New Saints | 0-0 | Helsingborg | |