Olimpija Ljubljana 6-6 AS Trenčín *
| 20.07.2016 | AS Trenčín | 2-3 | Olimpija Ljubljana | |
| 13.07.2016 | Olimpija Ljubljana | 3-4 | AS Trenčín | |
*BATE Borisov 4-2 Seinajoen JK
| 19.07.2016 | Seinajoen JK | 2-2 | BATE Borisov | |
| 12.07.2016 | BATE Borisov | 2-0 | Seinajoen JK | |
Lincoln Red Imps 1-3 Celtic FC *
| 20.07.2016 | Celtic FC | 3-0 | Lincoln Red Imps | |
| 12.07.2016 | Lincoln Red Imps | 1-0 | Celtic FC | |
Crusaders Belfast 0-9 FC København *
| 19.07.2016 | FC København | 6-0 | Crusaders Belfast | |
| 13.07.2016 | Crusaders Belfast | 0-3 | FC København | |
*Dinamo Tbilisi 3-1 Alashkert Martuni
| 19.07.2016 | Alashkert Martuni | 1-1 | Dinamo Tbilisi | |
| 12.07.2016 | Dinamo Tbilisi | 2-0 | Alashkert Martuni | |
Vardar Skopje 3-5 Dinamo Zagreb *
| 20.07.2016 | Dinamo Zagreb | 3-2 | Vardar Skopje | |
| 12.07.2016 | Vardar Skopje | 1-2 | Dinamo Zagreb | |
*Dundalk FC 3-3 FH Hafnarfjordur
| 20.07.2016 | FH Hafnarfjordur | 2-2 | Dundalk FC | |
| 13.07.2016 | Dundalk FC | 1-1 | FH Hafnarfjordur | |
*Qarabag FK 3-1 F91 Dudelange
| 20.07.2016 | F91 Dudelange | 1-1 | Qarabag FK | |
| 12.07.2016 | Qarabag FK | 2-0 | F91 Dudelange | |
*Partizani Tirana 2-2 Ferencvaros TC
| 20.07.2016 | Ferencvaros TC | 1-1/p.1-3 | Partizani Tirana | |
| 13.07.2016 | Partizani Tirana | 1-1 | Ferencvaros TC | |
Valletta FC 2-4 FK Crvena Zvezda *
| 19.07.2016 | FK Crvena Zvezda | 2-1 | Valletta FC | |
| 12.07.2016 | Valletta FC | 1-2 | FK Crvena Zvezda | |
*Ludogorets 5-0 FK Mladost
| 19.07.2016 | FK Mladost | 0-3 | Ludogorets | |
| 13.07.2016 | Ludogorets | 2-0 | FK Mladost | |
*Hapoel Be'er Sheva 3-2 Sheriff Tiraspol
| 19.07.2016 | Sheriff Tiraspol | 0-0 | Hapoel Be'er Sheva | |
| 12.07.2016 | Hapoel Be'er Sheva | 3-2 | Sheriff Tiraspol | |
Zrinjski Mostar 1-3 Legia Warszawa *
| 19.07.2016 | Legia Warszawa | 2-0 | Zrinjski Mostar | |
| 12.07.2016 | Zrinjski Mostar | 1-1 | Legia Warszawa | |
*Rosenborg BK 5-4 Norrköping
| 20.07.2016 | Norrköping | 3-2 | Rosenborg BK | |
| 13.07.2016 | Rosenborg BK | 3-1 | Norrköping | |
*RB Salzburg 3-0 FK Liepaja
| 19.07.2016 | FK Liepaja | 0-2 | RB Salzburg | |
| 12.07.2016 | RB Salzburg | 1-0 | FK Liepaja | |
The New Saints 0-3 APOEL FC *
| 19.07.2016 | APOEL FC | 3-0 | The New Saints | |
| 12.07.2016 | The New Saints | 0-0 | APOEL FC | |
VMFD Zalgiris 1-2 FC Astana *
| 20.07.2016 | FC Astana | 2-1 | VMFD Zalgiris | |
| 13.07.2016 | VMFD Zalgiris | 0-0 | FC Astana | |