VMFD Zalgiris 2-6 Admira *
| 26.07.2012 | Admira | 5-1 | VMFD Zalgiris | |
| 19.07.2012 | VMFD Zalgiris | 1-1 | Admira | |
Levadia Tallinn 1-6 Anorthosis FC *
| 26.07.2012 | Anorthosis FC | 3-0 | Levadia Tallinn | |
| 19.07.2012 | Levadia Tallinn | 1-3 | Anorthosis FC | |
*Anzhi Makhachkala 5-0 Budapest Honved
| 26.07.2012 | Budapest Honved | 0-4 | Anzhi Makhachkala | |
| 19.07.2012 | Anzhi Makhachkala | 1-0 | Budapest Honved | |
*Bnei Yehuda 3-0 Shirak FC
| 26.07.2012 | Shirak FC | 0-1 | Bnei Yehuda | |
| 19.07.2012 | Bnei Yehuda | 2-0 | Shirak FC | |
*BSC Young Boys 1-1 Zimbru Chisinau
| 26.07.2012 | Zimbru Chisinau | 1-0/p.1-4 | BSC Young Boys | |
| 19.07.2012 | BSC Young Boys | 1-0 | Zimbru Chisinau | |
*Metalurg Donetsk 11-2 Celik Niksic
| 26.07.2012 | Celik Niksic | 2-4 | Metalurg Donetsk | |
| 19.07.2012 | Metalurg Donetsk | 7-0 | Celik Niksic | |
Differdange 2-4 KAA Gent *
| 26.07.2012 | KAA Gent | 3-2 | Differdange | |
| 19.07.2012 | Differdange | 0-1 | KAA Gent | |
AGF Aarhus 2-5 Dila Gori *
| 26.07.2012 | Dila Gori | 3-1 | AGF Aarhus | |
| 19.07.2012 | AGF Aarhus | 1-2 | Dila Gori | |
*Eskişehirspor 3-1 St Johnstone
| 26.07.2012 | St Johnstone | 1-1 | Eskişehirspor | |
| 19.07.2012 | Eskişehirspor | 2-0 | St Johnstone | |
FC Milsami 4-5 FK Aktobe *
| 26.07.2012 | FK Aktobe | 3-0 | FC Milsami | |
| 19.07.2012 | FC Milsami | 4-2 | FK Aktobe | |
*FC Twente 6-1 Inter Turku
| 26.07.2012 | Inter Turku | 0-5 | FC Twente | |
| 19.07.2012 | FC Twente | 1-1 | Inter Turku | |
*AIK Fotboll 2-1 FH Hafnarfjordur
| 26.07.2012 | FH Hafnarfjordur | 0-1 | AIK Fotboll | |
| 19.07.2012 | AIK Fotboll | 1-1 | FH Hafnarfjordur | |
Levski Sofia 2-3 FK Sarajevo *
| 26.07.2012 | FK Sarajevo | 3-1 | Levski Sofia | |
| 19.07.2012 | Levski Sofia | 1-0 | FK Sarajevo | |
*FK Vojvodina 5-1 FK Suduva
| 26.07.2012 | FK Suduva | 0-4 | FK Vojvodina | |
| 19.07.2012 | FK Vojvodina | 1-1 | FK Suduva | |
JJK Jyväskylä 3-3 FK Zeta *
| 26.07.2012 | FK Zeta | 1-0 | JJK Jyväskylä | |
| 19.07.2012 | JJK Jyväskylä | 3-2 | FK Zeta | |
*Hajduk Split 2-1 Skonto Riga
| 26.07.2012 | Skonto Riga | 1-0 | Hajduk Split | |
| 19.07.2012 | Hajduk Split | 2-0 | Skonto Riga | |
Dacia Chisinau 1-2 IF Elfsborg *
| 26.07.2012 | IF Elfsborg | 2-0 | Dacia Chisinau | |
| 19.07.2012 | Dacia Chisinau | 1-0 | IF Elfsborg | |
Inter Baku 2-2 Asteras Tripoli *
| 26.07.2012 | Asteras Tripoli | 1-1/p.4-2 | Inter Baku | |
| 19.07.2012 | Inter Baku | 1-1 | Asteras Tripoli | |
KF Tirana 1-6 Aalesund FK *
| 26.07.2012 | Aalesund FK | 5-0 | KF Tirana | |
| 19.07.2012 | KF Tirana | 1-1 | Aalesund FK | |
Khazar Lankaran 1-2 Lech Poznan *
| 26.07.2012 | Lech Poznan | 1-0 | Khazar Lankaran | |
| 19.07.2012 | Khazar Lankaran | 1-1 | Lech Poznan | |
Metalurgs Liepaja 3-7 Legia Warszawa *
| 26.07.2012 | Legia Warszawa | 5-1 | Metalurgs Liepaja | |
| 19.07.2012 | Metalurgs Liepaja | 2-2 | Legia Warszawa | |
Maccabi Netanya 2-2 KuPS Kuopio *
| 26.07.2012 | KuPS Kuopio | 0-1 | Maccabi Netanya | |
| 19.07.2012 | Maccabi Netanya | 1-2 | KuPS Kuopio | |
*Mura 1-1 CSKA Sofia
| 26.07.2012 | CSKA Sofia | 1-1 | Mura | |
| 19.07.2012 | Mura | 0-0 | CSKA Sofia | |
Naftan Novopolotsk 6-7 FK Crvena Zvezda *
| 26.07.2012 | FK Crvena Zvezda | 3-3 | Naftan Novopolotsk | |
| 19.07.2012 | Naftan Novopolotsk | 3-4 | FK Crvena Zvezda | |
Olimpija Ljubljana 0-1 Tromso IL *
| 26.07.2012 | Tromso IL | 1-0 AET | Olimpija Ljubljana | |
| 19.07.2012 | Olimpija Ljubljana | 0-0 | Tromso IL | |
*Slaven Belupo 10-2 Portadown FC
| 26.07.2012 | Portadown FC | 2-4 | Slaven Belupo | |
| 19.07.2012 | Slaven Belupo | 6-0 | Portadown FC | |
*Rapid Bucuresti 5-1 MyPa
| 26.07.2012 | MyPa | 0-2 | Rapid Bucuresti | |
| 19.07.2012 | Rapid Bucuresti | 3-1 | MyPa | |
*Rosenborg BK 4-3 FK Ordabasy
| 26.07.2012 | FK Ordabasy | 1-2 | Rosenborg BK | |
| 19.07.2012 | Rosenborg BK | 2-2 | FK Ordabasy | |
*Ruch Chorzow 6-1 Metalurg Skopje
| 26.07.2012 | Metalurg Skopje | 0-3 | Ruch Chorzow | |
| 19.07.2012 | Ruch Chorzow | 3-1 | Metalurg Skopje | |
*Servette FC 5-1 Gandzasar Kapan
| 26.07.2012 | Gandzasar Kapan | 1-3 | Servette FC | |
| 19.07.2012 | Servette FC | 2-0 | Gandzasar Kapan | |
Shakhter Soligorsk 1-1 SV Ried *
| 26.07.2012 | SV Ried | 0-0 | Shakhter Soligorsk | |
| 19.07.2012 | Shakhter Soligorsk | 1-1 | SV Ried | |
Slovan Bratislava 1-1 Videoton FC *
| 26.07.2012 | Videoton FC | 0-0 | Slovan Bratislava | |
| 19.07.2012 | Slovan Bratislava | 1-1 | Videoton FC | |
*Spartak Trnava 4-2 Sligo Rovers
| 26.07.2012 | Sligo Rovers | 1-1 | Spartak Trnava | |
| 19.07.2012 | Spartak Trnava | 3-1 | Sligo Rovers | |
Siroki Brijeg 2-3 St Patrick's Dublin *
| 26.07.2012 | St Patrick's Dublin | 2-1 AET | Siroki Brijeg | |
| 19.07.2012 | Siroki Brijeg | 1-1 | St Patrick's Dublin | |
*Mlada Boleslav 4-0 Thor Akureyri
| 26.07.2012 | Thor Akureyri | 0-1 | Mlada Boleslav | |
| 19.07.2012 | Mlada Boleslav | 3-0 | Thor Akureyri | |
Metalurgi Rustavi 1-5 Viktoria Plzen *
| 26.07.2012 | Viktoria Plzen | 2-0 | Metalurgi Rustavi | |
| 19.07.2012 | Metalurgi Rustavi | 1-3 | Viktoria Plzen | |
Lokomotiv Plovdiv 5-7 Vitesse Arnhem *
| 26.07.2012 | Vitesse Arnhem | 3-1 | Lokomotiv Plovdiv | |
| 19.07.2012 | Lokomotiv Plovdiv | 4-4 | Vitesse Arnhem | |