APOEL FC 1-2 Trabzonspor *
| 24.08.2006 | Trabzonspor | 1-0 | APOEL FC | |
| 10.08.2006 | APOEL FC | 1-1 | Trabzonspor | |
*Rubin Kazan 5-0 BATE Borisov
| 24.08.2006 | BATE Borisov | 0-2 | Rubin Kazan | |
| 10.08.2006 | Rubin Kazan | 3-0 | BATE Borisov | |
*Dinamo Bucuresti 2-1 Beitar Jerusalem
| 24.08.2006 | Beitar Jerusalem | 1-1 | Dinamo Bucuresti | |
| 10.08.2006 | Dinamo Bucuresti | 1-0 | Beitar Jerusalem | |
*Chernomorets Odessa 1-1 Wisła Płock
| 24.08.2006 | Wisła Płock | 1-1 | Chernomorets Odessa | |
| 10.08.2006 | Chernomorets Odessa | 0-0 | Wisła Płock | |
Gretna FC 3-7 Derry City *
| 24.08.2006 | Derry City | 2-2 | Gretna FC | |
| 10.08.2006 | Gretna FC | 1-5 | Derry City | |
*Hapoel Tel Aviv 4-2 Domžale
| 24.08.2006 | Domžale | 0-3 | Hapoel Tel Aviv | |
| 10.08.2006 | Hapoel Tel Aviv | 1-2 | Domžale | |
*IK Start 1-1 Drogheda Utd
| 24.08.2006 | Drogheda Utd | 1-0/p.11-12 | IK Start | |
| 10.08.2006 | IK Start | 1-0 | Drogheda Utd | |
*Randers FC 3-2 FBK Kaunas
| 24.08.2006 | FBK Kaunas | 1-0 | Randers FC | |
| 10.08.2006 | Randers FC | 3-1 | FBK Kaunas | |
*FC Artmedia Bratislava 5-3 Dinamo Minsk
| 24.08.2006 | Dinamo Minsk | 2-3 | FC Artmedia Bratislava | |
| 10.08.2006 | FC Artmedia Bratislava | 2-1 | Dinamo Minsk | |
FK Sarajevo 1-2 Rapid Bucuresti *
| 24.08.2006 | Rapid Bucuresti | 2-0 | FK Sarajevo | |
| 10.08.2006 | FK Sarajevo | 1-0 | Rapid Bucuresti | |
FK Suduva 2-7 Club Brugge *
| 24.08.2006 | Club Brugge | 5-2 | FK Suduva | |
| 10.08.2006 | FK Suduva | 0-2 | Club Brugge | |
Flora Tallinn 0-4 Brøndby IF *
| 24.08.2006 | Brøndby IF | 4-0 | Flora Tallinn | |
| 10.08.2006 | Flora Tallinn | 0-0 | Brøndby IF | |
FC Fehervar 1-3 Grasshoppers *
| 24.08.2006 | Grasshoppers | 2-0 | FC Fehervar | |
| 10.08.2006 | FC Fehervar | 1-1 | Grasshoppers | |
*CSKA Sofia 1-1 Hajduk Kula
| 24.08.2006 | Hajduk Kula | 1-1 AET | CSKA Sofia | |
| 10.08.2006 | CSKA Sofia | 0-0 | Hajduk Kula | |
*Hertha BSC 3-2 Ameri Tbilisi
| 24.08.2006 | Ameri Tbilisi | 2-2 | Hertha BSC | |
| 10.08.2006 | Hertha BSC | 1-0 | Ameri Tbilisi | |
KF Tirana 1-5 Kayserispor *
| 24.08.2006 | Kayserispor | 3-1 | KF Tirana | |
| 10.08.2006 | KF Tirana | 0-2 | Kayserispor | |
FC Twente 1-2 Levadia Tallinn *
| 24.08.2006 | Levadia Tallinn | 1-0 | FC Twente | |
| 10.08.2006 | FC Twente | 1-1 | Levadia Tallinn | |
Bnei Yehuda 0-6 Lokomotiv Sofia *
| 24.08.2006 | Lokomotiv Sofia | 4-0 | Bnei Yehuda | |
| 10.08.2006 | Bnei Yehuda | 0-2 | Lokomotiv Sofia | |
*FK Partizan 3-2 Maribor
| 24.08.2006 | Maribor | 1-1 | FK Partizan | |
| 10.08.2006 | FK Partizan | 2-1 | Maribor | |
Mattersburg 1-2 Wisła Kraków *
| 24.08.2006 | Wisła Kraków | 1-0 | Mattersburg | |
| 10.08.2006 | Mattersburg | 1-1 | Wisła Kraków | |
Zimbru Chisinau 0-3 Metalurg Zaporozhye *
| 24.08.2006 | Metalurg Zaporozhye | 3-0 | Zimbru Chisinau | |
| 10.08.2006 | Zimbru Chisinau | 0-0 | Metalurg Zaporozhye | |
*Molde FK 2-1 Skonto Riga
| 24.08.2006 | Skonto Riga | 1-2 | Molde FK | |
| 10.08.2006 | Molde FK | 0-0 | Skonto Riga | |
FK Ventspils 0-1 Newcastle United *
| 24.08.2006 | Newcastle United | 0-0 | FK Ventspils | |
| 10.08.2006 | FK Ventspils | 0-1 | Newcastle United | |
*Odense BK 6-1 Llanelli Town
| 24.08.2006 | Llanelli Town | 1-5 | Odense BK | |
| 10.08.2006 | Odense BK | 1-0 | Llanelli Town | |
OFK Beograd 2-5 AJ Auxerre *
| 24.08.2006 | AJ Auxerre | 5-1 | OFK Beograd | |
| 08.08.2006 | OFK Beograd | 1-0 | AJ Auxerre | |
BSC Young Boys 3-3 Olympique Marseille *
| 24.08.2006 | Olympique Marseille | 0-0 | BSC Young Boys | |
| 10.08.2006 | BSC Young Boys | 3-3 | Olympique Marseille | |
Omonia Nicosia 1-2 Litex Lovech *
| 24.08.2006 | Litex Lovech | 2-1 | Omonia Nicosia | |
| 08.08.2006 | Omonia Nicosia | 0-0 | Litex Lovech | |
Roeselare 2-6 Ethnikos Achnas *
| 24.08.2006 | Ethnikos Achnas | 5-0 | Roeselare | |
| 10.08.2006 | Roeselare | 2-1 | Ethnikos Achnas | |
SK Brann 4-4 Åtvidabergs FF *
| 24.08.2006 | Åtvidabergs FF | 1-1 | SK Brann | |
| 10.08.2006 | SK Brann | 3-3 | Åtvidabergs FF | |
Karvan Yevlax 0-2 Slavia Praha *
| 24.08.2006 | Slavia Praha | 0-0 | Karvan Yevlax | |
| 10.08.2006 | Karvan Yevlax | 0-2 | Slavia Praha | |