Atromitos FC 1-6 Sevilla FC *
| 28.09.2006 | Sevilla FC | 4-0 | Atromitos FC | |
| 14.09.2006 | Atromitos FC | 1-2 | Sevilla FC | |
Legia Warszawa 1-2 Austria Wien *
| 28.09.2006 | Austria Wien | 1-0 | Legia Warszawa | |
| 14.09.2006 | Legia Warszawa | 1-1 | Austria Wien | |
*Besiktas JK 4-2 CSKA Sofia
| 28.09.2006 | CSKA Sofia | 2-2 AET | Besiktas JK | |
| 14.09.2006 | Besiktas JK | 2-0 | CSKA Sofia | |
RB Salzburg 2-4 Blackburn Rovers *
| 28.09.2006 | Blackburn Rovers | 2-0 | RB Salzburg | |
| 14.09.2006 | RB Salzburg | 2-2 | Blackburn Rovers | |
*SC Braga 3-2 ChievoVerona
| 28.09.2006 | ChievoVerona | 2-1 AET | SC Braga | |
| 14.09.2006 | SC Braga | 2-0 | ChievoVerona | |
MFK Ruzomberok 1-2 Club Brugge *
| 28.09.2006 | Club Brugge | 1-1 | MFK Ruzomberok | |
| 14.09.2006 | MFK Ruzomberok | 0-1 | Club Brugge | |
Derry City 0-2 Paris St. Germain *
| 28.09.2006 | Paris St. Germain | 2-0 | Derry City | |
| 14.09.2006 | Derry City | 0-0 | Paris St. Germain | |
Dinamo Zagreb 2-5 AJ Auxerre *
| 28.09.2006 | AJ Auxerre | 3-1 | Dinamo Zagreb | |
| 14.09.2006 | Dinamo Zagreb | 1-2 | AJ Auxerre | |
*Eintracht Frankfurt 6-2 Brøndby IF
| 28.09.2006 | Brøndby IF | 2-2 | Eintracht Frankfurt | |
| 14.09.2006 | Eintracht Frankfurt | 4-0 | Brøndby IF | |
*FK Partizan 4-3 FC Groningen
| 28.09.2006 | FC Groningen | 1-0 | FK Partizan | |
| 14.09.2006 | FK Partizan | 4-2 | FC Groningen | |
FC Sion 1-3 Bayer Leverkusen *
| 28.09.2006 | Bayer Leverkusen | 3-1 | FC Sion | |
| 14.09.2006 | FC Sion | 0-0 | Bayer Leverkusen | |
Lokomotiv Sofia 2-2 Feyenoord *
| 28.09.2006 | Feyenoord | 0-0 | Lokomotiv Sofia | |
| 14.09.2006 | Lokomotiv Sofia | 2-2 | Feyenoord | |
Åtvidabergs FF 0-8 Grasshoppers *
| 28.09.2006 | Grasshoppers | 5-0 | Åtvidabergs FF | |
| 14.09.2006 | Åtvidabergs FF | 0-3 | Grasshoppers | |
Chernomorets Odessa 1-4 Hapoel Tel Aviv *
| 28.09.2006 | Hapoel Tel Aviv | 3-1 | Chernomorets Odessa | |
| 14.09.2006 | Chernomorets Odessa | 0-1 | Hapoel Tel Aviv | |
Hearts FC 0-2 Sparta Praha *
| 28.09.2006 | Sparta Praha | 0-0 | Hearts FC | |
| 14.09.2006 | Hearts FC | 0-2 | Sparta Praha | |
Hertha BSC 2-3 Odense BK *
| 28.09.2006 | Odense BK | 1-0 | Hertha BSC | |
| 14.09.2006 | Hertha BSC | 2-2 | Odense BK | |
*AZ Alkmaar 4-3 Kayserispor
| 28.09.2006 | Kayserispor | 1-1 | AZ Alkmaar | |
| 14.09.2006 | AZ Alkmaar | 3-2 | Kayserispor | |
Lokomotiv Moscow 2-3 Zulte Waregem *
| 28.09.2006 | Zulte Waregem | 2-0 | Lokomotiv Moscow | |
| 14.09.2006 | Lokomotiv Moscow | 2-1 | Zulte Waregem | |
*Maccabi Haifa 4-2 Litex Lovech
| 28.09.2006 | Litex Lovech | 1-3 | Maccabi Haifa | |
| 14.09.2006 | Maccabi Haifa | 1-1 | Litex Lovech | |
*Panathinaikos 2-1 Metalurg Zaporozhye
| 28.09.2006 | Metalurg Zaporozhye | 0-1 | Panathinaikos | |
| 14.09.2006 | Panathinaikos | 1-1 | Metalurg Zaporozhye | |
Olympique Marseille 3-4 Mlada Boleslav *
| 28.09.2006 | Mlada Boleslav | 4-2 | Olympique Marseille | |
| 14.09.2006 | Olympique Marseille | 1-0 | Mlada Boleslav | |
Molde FK 0-2 Rangers FC *
| 28.09.2006 | Rangers FC | 2-0 | Molde FK | |
| 14.09.2006 | Molde FK | 0-0 | Rangers FC | |
*Rapid Bucuresti 3-1 Nacional Madeira
| 28.09.2006 | Nacional Madeira | 1-2 AET | Rapid Bucuresti | |
| 14.09.2006 | Rapid Bucuresti | 1-0 | Nacional Madeira | |
Levadia Tallinn 1-3 Newcastle United *
| 28.09.2006 | Newcastle United | 2-1 | Levadia Tallinn | |
| 14.09.2006 | Levadia Tallinn | 0-1 | Newcastle United | |
Rubin Kazan 0-2 Parma FC *
| 28.09.2006 | Parma FC | 1-0 | Rubin Kazan | |
| 14.09.2006 | Rubin Kazan | 0-1 | Parma FC | |
*FC Basel 7-2 Rabotnicki Skopje
| 28.09.2006 | Rabotnicki Skopje | 0-1 | FC Basel | |
| 14.09.2006 | FC Basel | 6-2 | Rabotnicki Skopje | |
*Fenerbahçe SK 5-1 Randers FC
| 28.09.2006 | Randers FC | 0-3 | Fenerbahçe SK | |
| 14.09.2006 | Fenerbahçe SK | 2-1 | Randers FC | |
Ethnikos Achnas 1-3 RC Lens *
| 28.09.2006 | RC Lens | 3-1 | Ethnikos Achnas | |
| 14.09.2006 | Ethnikos Achnas | 0-0 | RC Lens | |
FC Artmedia Bratislava 3-5 RCD Espanyol *
| 28.09.2006 | RCD Espanyol | 3-1 | FC Artmedia Bratislava | |
| 14.09.2006 | FC Artmedia Bratislava | 2-2 | RCD Espanyol | |
Vitória Setúbal 0-3 SC Heerenveen *
| 28.09.2006 | SC Heerenveen | 0-0 | Vitória Setúbal | |
| 14.09.2006 | Vitória Setúbal | 0-3 | SC Heerenveen | |
Schalke 04 2-3 AS Nancy-Lorraine *
| 28.09.2006 | AS Nancy-Lorraine | 3-1 | Schalke 04 | |
| 14.09.2006 | Schalke 04 | 1-0 | AS Nancy-Lorraine | |
SKODA Xanthi 4-8 Dinamo Bucuresti *
| 28.09.2006 | Dinamo Bucuresti | 4-1 | SKODA Xanthi | |
| 14.09.2006 | SKODA Xanthi | 3-4 | Dinamo Bucuresti | |
Slavia Praha 0-2 Tottenham *
| 28.09.2006 | Tottenham | 1-0 | Slavia Praha | |
| 14.09.2006 | Slavia Praha | 0-1 | Tottenham | |
*Slovan Liberec 4-1 FK Crvena Zvezda
| 28.09.2006 | FK Crvena Zvezda | 1-2 | Slovan Liberec | |
| 14.09.2006 | Slovan Liberec | 2-0 | FK Crvena Zvezda | |
Standard Liège 0-4 Celta de Vigo *
| 28.09.2006 | Celta de Vigo | 3-0 | Standard Liège | |
| 14.09.2006 | Standard Liège | 0-1 | Celta de Vigo | |
Trabzonspor 2-2 CA Osasuna *
| 28.09.2006 | CA Osasuna | 0-0 | Trabzonspor | |
| 14.09.2006 | Trabzonspor | 2-2 | CA Osasuna | |
*Wisła Kraków 2-1 Iraklis Salonica
| 28.09.2006 | Iraklis Salonica | 0-2 AET | Wisła Kraków | |
| 14.09.2006 | Wisła Kraków | 0-1 | Iraklis Salonica | |